STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiQannotation not available (739 aa)    
Predicted Functional Partners:
rlmL
Ribosomal RNA large subunit methyltransferase K/L; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Methylation occurs before assembly of 23S rRNA into 50S subunits; Belongs to the methyltransferase superfamily. RlmKL family
  
  
 0.850
nfrA
Bacteriophage adsorption protein A; (Microbial infection) Allows N4 phage attachment by binding to the viral non-contractile sheath protein
      
 0.802
potH
Putrescine transport system permease protein PotH; Required for the activity of the bacterial periplasmic transport system of putrescine
      
 0.770
yceA
UPF0176 protein YceA; Protein involved in cell cycle; Belongs to the UPF0176 family
      
 0.761
etk
Tyrosine-protein kinase etk; Protein involved in protein modification process; Belongs to the etk/wzc family
      
 0.751
garR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the 3-hydroxyisobutyrate dehydrogenase family
      
 0.751
uup
ABC transporter ATP-binding protein uup; Putative ATP-binding component of a transport system
   
  
 0.695
ybiW
Putative formate acetyltransferase 3; Protein involved in fermentation
      
 0.690
yoaC
annotation not available
      
 0.690
potI
Putrescine transport system permease protein PotI; Required for the activity of the bacterial periplasmic transport system of putrescine
      
 0.686
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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