Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| intR | racR | b1345 | b1356 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | 0.520 |
| intR | stfR | b1345 | b1372 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | Rac prophage; putative membrane protein; Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family | 0.878 |
| intR | tfaR | b1345 | b1373 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | Rac prophage; putative tail fiber assembly protein tfar; Belongs to the tfa family | 0.481 |
| intR | ydaF | b1345 | b4527 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | Uncharacterized protein YdaF; Phage or Prophage Related; To E.coli YdfA | 0.734 |
| intR | ydaS | b1345 | b1357 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | Rac prophage; toxin ydas; Uncharacterized protein YdaS; Phage or Prophage Related | 0.623 |
| intR | ydaV | b1345 | b1360 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | Rac prophage; putative atp-binding protein ydav; Uncharacterized protein YdaV; Putative DNA replication factor | 0.637 |
| intR | ymfD | b1345 | b1137 | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | E14 prophage; putative SAM-dependent methyltransferase; Uncharacterized protein YmfD; Phage or Prophage Related | 0.481 |
| racC | racR | b1351 | b1356 | Rac prophage; protein racc; RacC protein | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | 0.700 |
| racC | ydaE | b1351 | b4526 | Rac prophage; protein racc; RacC protein | Rac prophage; zinc-binding protein; Uncharacterized protein YdaE; Phage or Prophage Related | 0.960 |
| racC | ydaF | b1351 | b4527 | Rac prophage; protein racc; RacC protein | Uncharacterized protein YdaF; Phage or Prophage Related; To E.coli YdfA | 0.738 |
| racC | ydaG | b1351 | b1355 | Rac prophage; protein racc; RacC protein | Uncharacterized protein YdaG; Phage or Prophage Related | 0.734 |
| racR | intR | b1356 | b1345 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | 0.520 |
| racR | racC | b1356 | b1351 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Rac prophage; protein racc; RacC protein | 0.700 |
| racR | ydaE | b1356 | b4526 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Rac prophage; zinc-binding protein; Uncharacterized protein YdaE; Phage or Prophage Related | 0.680 |
| racR | ydaF | b1356 | b4527 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Uncharacterized protein YdaF; Phage or Prophage Related; To E.coli YdfA | 0.816 |
| racR | ydaG | b1356 | b1355 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Uncharacterized protein YdaG; Phage or Prophage Related | 0.735 |
| racR | ydaS | b1356 | b1357 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Rac prophage; toxin ydas; Uncharacterized protein YdaS; Phage or Prophage Related | 0.958 |
| racR | ydaV | b1356 | b1360 | Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage | Rac prophage; putative atp-binding protein ydav; Uncharacterized protein YdaV; Putative DNA replication factor | 0.565 |
| stfR | intR | b1372 | b1345 | Rac prophage; putative membrane protein; Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family | Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity) | 0.878 |
| stfR | tfaR | b1372 | b1373 | Rac prophage; putative membrane protein; Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family | Rac prophage; putative tail fiber assembly protein tfar; Belongs to the tfa family | 0.987 |
page 1 of 4
