STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaFUncharacterized protein YdaF; Phage or Prophage Related; To E.coli YdfA (51 aa)    
Predicted Functional Partners:
ydaG
Uncharacterized protein YdaG; Phage or Prophage Related
     
 0.971
stfR
Rac prophage; putative membrane protein; Prophage side tail fiber protein homolog StfR; Phage or Prophage Related; Belongs to the tail fiber family
      
 0.874
racR
Rac prophage; dna-binding transcriptional repressor racr; Repressor protein for rac prophage
     
 0.816
ydaS
Rac prophage; toxin ydas; Uncharacterized protein YdaS; Phage or Prophage Related
     
 0.808
racC
Rac prophage; protein racc; RacC protein
      
 0.738
ydaE
Rac prophage; zinc-binding protein; Uncharacterized protein YdaE; Phage or Prophage Related
      
 0.738
intR
Rac prophage; putative integrase; Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome (By similarity)
      
 0.734
ydaV
Rac prophage; putative atp-binding protein ydav; Uncharacterized protein YdaV; Putative DNA replication factor
     
 0.714
tfaR
Rac prophage; putative tail fiber assembly protein tfar; Belongs to the tfa family
      
 0.640
ymfD
E14 prophage; putative SAM-dependent methyltransferase; Uncharacterized protein YmfD; Phage or Prophage Related
      
 0.633
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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