STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ysaBUncharacterized protein. (99 aa)    
Predicted Functional Partners:
ybfP
Lipoprotein; Putative pectinase.
      
 0.835
pqiC
DUF330 family putative lipoprotein; Component of a transport pathway that contributes to membrane integrity.
      
 0.743
ysaA
Putative hydrogenase, 4Fe-4S ferredoxin-type component.
      
 0.731
ytcA
Putative inner membrane efflux pump-associated DUF1656 family protein.
      
 0.731
yiaA
YiaAB family inner membrane protein, tandem domains.
   
    0.649
glyQ
Glycine tRNA synthetase, alpha subunit; Protein involved in tRNA aminoacylation for protein translation; Belongs to the class-II aminoacyl-tRNA synthetase family.
     
 0.644
yeaY
Slp family lipoprotein, RpoE-regulated; Putative outer membrane protein.
      
 0.639
yiaM
2,3-diketo-L-gulonate TRAP transporter small permease protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system YiaMNO involved in the uptake of 2,3-diketo-L- gulonate.
   
  
 0.624
ydgI
Putative arginine/ornithine antiporter transporter; Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway; Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.
      
 0.587
yqhH
Outer membrane lipoprotein, Lpp paralog.
   
  
 0.536
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.