STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yobIannotation not available (21 aa)    
Predicted Functional Partners:
ynbG
annotation not available
      
 0.889
yqcG
annotation not available
      
 0.877
yqeL
annotation not available
      
 0.826
ykgR
annotation not available
      
 0.823
yqfG
annotation not available
      
 0.787
yohP
Uncharacterized membrane protein YohP; Pseudogene; putative channel/filament proteins
      
 0.783
ykgE
Putative lactate utilization oxidoreductase ykge; Uncharacterized protein YkgE; Putative dehydrogenase subunit
      
 0.677
yebB
Putative papain-like amidase yebb; To E.coli YiiX
       0.609
rclR
Arac family transcriptional regulator, reactive chlorine species (rcs)-specific activator of rcl operon; Involved in reactive chlorine species (RCS) stress resistance. Upregulates, in response to hypochlorous acid (HOCl), the expression of three genes essential for survival of RCS stress (rclA, rclB and rclC) and its own expression
      
 0.575
ruvB
Atp-dependent dna helicase, component of ruvabc resolvasome; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
       0.523
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.