STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MINDY2MINDY lysine 48 deubiquitinase 2. (621 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
   0.905
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
  
 0.800
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.799
ENSCWAP00000025072
annotation not available
    
   0.771
ENSCWAP00000006692
annotation not available
    
   0.750
RPS27A
Ribosomal protein S27a.
    
   0.750
ENSCWAP00000022461
annotation not available
    
   0.750
SSH2
Slingshot protein phosphatase 2.
      
 0.670
SETD4
SET domain containing 4.
    
 0.666
SETD3
SET domain containing 3, actin histidine methyltransferase.
    
 0.666
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.