STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF130Ring finger protein 130. (419 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
  0.799
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.762
ENSCWAP00000026989
annotation not available
    
   0.738
RNF145
Ring finger protein 145.
    
 
 0.633
RNF223
Ring finger protein 223.
      
 0.619
CGRRF1
Cell growth regulator with ring finger domain 1.
     
 0.617
ENSCWAP00000006692
annotation not available
    
 0.616
RPS27A
Ribosomal protein S27a.
    
 0.616
ENSCWAP00000022461
annotation not available
    
 0.616
RNF183
Ring finger protein 183.
      
 0.616
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.