STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1SUB1 regulator of transcription. (127 aa)    
Predicted Functional Partners:
SYMPK
Symplekin.
    
 
 0.970
C11orf58
Chromosome 11 open reading frame 58.
   
    0.782
ENSCWAP00000007420
annotation not available
   
    0.771
ENSCWAP00000016212
annotation not available
   
    0.771
ENSCWAP00000018210
annotation not available
   
    0.771
ENSCWAP00000021533
annotation not available
      
 0.735
ZC3H8
Zinc finger CCCH-type containing 8.
      
 0.684
POMP
Proteasome maturation protein.
   
  
 0.675
GTF2B
General transcription factor IIB.
    
 
 0.654
SYNE1
Spectrin repeat containing nuclear envelope protein 1.
      
 0.628
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.