STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPDPeptidase D. (493 aa)    
Predicted Functional Partners:
RIMKLB
Ribosomal modification protein rimK like family member B.
      
 0.742
PIPOX
Pipecolic acid and sarcosine oxidase.
  
 
 0.715
DDO
D-aspartate oxidase.
  
 
 0.715
DAO
D-amino acid oxidase.
  
 
 0.715
PDPR
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.711
SARDH
Sarcosine dehydrogenase.
  
 0.711
DMGDH
Dimethylglycine dehydrogenase.
  
 0.711
AMT
Aminomethyltransferase.
  
 0.711
AIFM1
Apoptosis inducing factor mitochondria associated 1.
    
 0.671
AIFM3
Apoptosis inducing factor mitochondria associated 3.
    
 0.671
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.