CLNS1A protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CLNS1A

Chloride nucleotide-sensitive channel 1A. (237 aa)

Predicted Functional Partners:

WDR77

0.999

PRMT5

0.999

SNRPF

0.992

SNRPD2

0.991

SNRPD1

0.985

ENSCWAP00000010435

0.983

ENSCWAP00000007547

0.978

ENSCWAP00000000357

0.973

SNRPE

0.973

LSM2

0.963

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLNS1A	ENSCWAP00000000357	ENSCWAP00000001045	ENSCWAP00000000357	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.973
CLNS1A	ENSCWAP00000007547	ENSCWAP00000001045	ENSCWAP00000007547	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.978
CLNS1A	ENSCWAP00000010435	ENSCWAP00000001045	ENSCWAP00000010435	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.983
CLNS1A	LSM2	ENSCWAP00000001045	ENSCWAP00000004762	Chloride nucleotide-sensitive channel 1A.	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.963
CLNS1A	PRMT5	ENSCWAP00000001045	ENSCWAP00000027418	Chloride nucleotide-sensitive channel 1A.	Protein arginine methyltransferase 5.	0.999
CLNS1A	SNRPD1	ENSCWAP00000001045	ENSCWAP00000008071	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D1 polypeptide.	0.985
CLNS1A	SNRPD2	ENSCWAP00000001045	ENSCWAP00000009859	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D2 polypeptide.	0.991
CLNS1A	SNRPE	ENSCWAP00000001045	ENSCWAP00000019681	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide E.	0.973
CLNS1A	SNRPF	ENSCWAP00000001045	ENSCWAP00000022633	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide F.	0.992
CLNS1A	WDR77	ENSCWAP00000001045	ENSCWAP00000000243	Chloride nucleotide-sensitive channel 1A.	WD repeat domain 77.	0.999
ENSCWAP00000000357	CLNS1A	ENSCWAP00000000357	ENSCWAP00000001045	annotation not available	Chloride nucleotide-sensitive channel 1A.	0.973
ENSCWAP00000000357	ENSCWAP00000007547	ENSCWAP00000000357	ENSCWAP00000007547	annotation not available	annotation not available	0.997
ENSCWAP00000000357	ENSCWAP00000010435	ENSCWAP00000000357	ENSCWAP00000010435	annotation not available	annotation not available	0.999
ENSCWAP00000000357	LSM2	ENSCWAP00000000357	ENSCWAP00000004762	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.993
ENSCWAP00000000357	PRMT5	ENSCWAP00000000357	ENSCWAP00000027418	annotation not available	Protein arginine methyltransferase 5.	0.780
ENSCWAP00000000357	SNRPD1	ENSCWAP00000000357	ENSCWAP00000008071	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.998
ENSCWAP00000000357	SNRPD2	ENSCWAP00000000357	ENSCWAP00000009859	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
ENSCWAP00000000357	SNRPF	ENSCWAP00000000357	ENSCWAP00000022633	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSCWAP00000000357	WDR77	ENSCWAP00000000357	ENSCWAP00000000243	annotation not available	WD repeat domain 77.	0.900
ENSCWAP00000007547	CLNS1A	ENSCWAP00000007547	ENSCWAP00000001045	annotation not available	Chloride nucleotide-sensitive channel 1A.	0.978