STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHPRHSNF2 histone linker PHD RING helicase. (1689 aa)    
Predicted Functional Partners:
RAD18
RAD18 E3 ubiquitin protein ligase.
    
 0.987
PCNA
Proliferating cell nuclear antigen.
   
 0.985
UBE2V2
Ubiquitin conjugating enzyme E2 V2.
    
 0.901
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.852
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.852
HLTF
Helicase like transcription factor.
   
 
 0.851
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.843
DTL
Denticleless E3 ubiquitin protein ligase homolog.
    
 
 0.815
PGM2
Phosphoglucomutase 2.
   
    0.803
ENSCWAP00000002640
annotation not available
    
 0.782
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.