STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYL1LYL1 basic helix-loop-helix family member. (279 aa)    
Predicted Functional Partners:
TCF3
Transcription factor 3.
    
 0.966
TCF4
Transcription factor 4.
    
 0.899
TCF12
Transcription factor 12.
    
 0.899
LMO2
LIM domain only 2.
   
 0.814
LDB1
LIM domain binding 1.
    
 0.785
LDB2
LIM domain binding 2.
    
 0.729
GATA2
GATA binding protein 2.
    
 0.669
RUNX1
RUNX family transcription factor 1.
    
 0.666
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 
 0.640
EP300
E1A binding protein p300.
    
 0.635
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.