STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD4RNA pseudouridine synthase D4. (376 aa)    
Predicted Functional Partners:
DDX28
DEAD-box helicase 28.
   
 
 0.971
FASTKD2
FAST kinase domains 2.
   
 0.968
NGRN
Neugrin, neurite outgrowth associated.
   
 0.966
RCC1L
RCC1 like.
    
 0.938
TRUB2
TruB pseudouridine synthase family member 2.
  
 0.915
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.895
MTERF3
Mitochondrial transcription termination factor 3.
   
 0.892
ENSCWAP00000002777
annotation not available
  
 
 0.891
PUS7L
Pseudouridine synthase 7 like.
    
 
 0.848
IKBIP
IKBKB interacting protein.
    
   0.827
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.