Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH1G-patch domain containing 1. (932 aa)    
Predicted Functional Partners:
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.990
YJU2
YJU2 splicing factor homolog.
    
 0.990
CCDC12
Coiled-coil domain containing 12.
    
 0.984
CDC40
Cell division cycle 40.
    
  0.975
PPIL1
Peptidylprolyl isomerase like 1.
   
  0.974
SDE2
SDE2 telomere maintenance homolog.
    
 0.973
WDR83
WD repeat domain 83.
    
 
 0.972
PPIE
Peptidylprolyl isomerase E.
    
  0.971
CWC22
CWC22 spliceosome associated protein homolog.
    
  0.965
PLRG1
Pleiotropic regulator 1.
    
 
 0.964
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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