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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH1G-patch domain containing 1. (932 aa)    
Predicted Functional Partners:
SYF2
SYF2 pre-mRNA splicing factor.
    
  0.984
CCDC12
Coiled-coil domain containing 12.
    
 0.980
YJU2
YJU2 splicing factor homolog.
    
  0.978
MTREX
Mtr4 exosome RNA helicase.
   
 0.960
CDC40
Cell division cycle 40.
    
  0.960
SRRM1
Serine and arginine repetitive matrix 1.
     
 0.959
PPIL1
Peptidylprolyl isomerase like 1.
   
  0.958
DHX35
DEAH-box helicase 35.
    
 0.957
CWC22
CWC22 spliceosome associated protein homolog.
    
  0.955
PPIL2
Peptidylprolyl isomerase like 2.
   
  0.955
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.