Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PYGO2Pygopus family PHD finger 2. (406 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
   
  0.931
SSBP2
Single stranded DNA binding protein 2.
    
   0.833
SSBP4
Single stranded DNA binding protein 4.
    
   0.833
LDB2
LIM domain binding 2.
   
   0.825
SSBP3
Single stranded DNA binding protein 3.
    
   0.799
BCL9
BCL9 transcription coactivator.
    
 0.779
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.714
CTNNB1
Catenin beta 1.
    
 0.711
LEF1
Lymphoid enhancer binding factor 1.
    
 0.688
RANBP2
RAN binding protein 2.
    
 0.677
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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