Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MITD1Microtubule interacting and trafficking domain containing 1. (249 aa)    
Predicted Functional Partners:
CHMP5
Charged multivesicular body protein 5.
   
 
 0.943
CHMP2A
Charged multivesicular body protein 2A.
   
 
 0.925
CHMP1A
Charged multivesicular body protein 1A.
    
 
 0.883
PGLYRP1
Peptidoglycan recognition protein 1.
      
 0.754
TMEM121
Transmembrane protein 121.
      
 0.723
ENSCWAP00000001290
annotation not available
      
 0.611
ENSCWAP00000013789
annotation not available
      
 0.611
CAPN7
Calpain 7.
   
  
 0.599
TXNDC9
Thioredoxin domain containing 9.
      
 0.595
DUSP23
Dual specificity phosphatase 23.
    
 
 0.593
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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