STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT1tRNA methyltransferase 1. (660 aa)    
Predicted Functional Partners:
HSPBP1
HSPA (Hsp70) binding protein 1.
   
    0.846
RPF2
Ribosome production factor 2 homolog.
   
  
 0.821
UTP4
UTP4 small subunit processome component.
   
    0.795
WDR46
WD repeat domain 46.
   
    0.786
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
    0.782
ENSCWAP00000001969
annotation not available
  
   0.782
ENSCWAP00000005707
annotation not available
  
   0.782
BRIX1
Biogenesis of ribosomes BRX1.
   
    0.773
GRWD1
Glutamate rich WD repeat containing 1.
   
    0.771
DDX27
DEAD-box helicase 27.
  
   0.770
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.