STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCWAP00000001288annotation not available (616 aa)    
Predicted Functional Partners:
ENSCWAP00000011123
annotation not available
   
 0.846
ENSCWAP00000018117
annotation not available
   
 0.846
DDX60
DExD/H-box helicase 60.
    
 0.786
SF3B1
Splicing factor 3b subunit 1.
   
 0.776
RBM8A
RNA binding motif protein 8A.
    
 0.762
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.761
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.748
SF3B3
Splicing factor 3b subunit 3.
    
 0.740
PRPF6
pre-mRNA processing factor 6.
    
 0.738
DHX40
DEAH-box helicase 40.
    
 0.738
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.