Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCWAP00000001288annotation not available (616 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.682
PRPF8
pre-mRNA processing factor 8.
    
 0.672
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.666
KRR1
KRR1 small subunit processome component homolog.
   
 0.665
PDCD11
Programmed cell death 11.
   
 0.661
RANBP2
RAN binding protein 2.
    
  0.655
TEP1
Telomerase associated protein 1.
    
 0.655
SF3B3
Splicing factor 3b subunit 3.
    
 0.654
RBM8A
RNA binding motif protein 8A.
    
 0.652
PRPF6
pre-mRNA processing factor 6.
    
 0.644
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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