PGRMC1 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PGRMC1

Progesterone receptor membrane component 1. (194 aa)

Predicted Functional Partners:

BCAP31

0.964

TMEM97

0.941

FECH

0.938

CYP51A1

0.930

PGRMC2

0.905

BCAP29

0.885

RPN1

0.863

ENSCWAP00000009632

0.862

ENSCWAP00000009672

0.862

DHCR24

0.848

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCAP29	BCAP31	ENSCWAP00000017694	ENSCWAP00000017423	B cell receptor associated protein 29.	B cell receptor associated protein 31.	0.950
BCAP29	PGRMC1	ENSCWAP00000017694	ENSCWAP00000001328	B cell receptor associated protein 29.	Progesterone receptor membrane component 1.	0.885
BCAP29	PGRMC2	ENSCWAP00000017694	ENSCWAP00000027850	B cell receptor associated protein 29.	Progesterone receptor membrane component 2.	0.681
BCAP31	BCAP29	ENSCWAP00000017423	ENSCWAP00000017694	B cell receptor associated protein 31.	B cell receptor associated protein 29.	0.950
BCAP31	PGRMC1	ENSCWAP00000017423	ENSCWAP00000001328	B cell receptor associated protein 31.	Progesterone receptor membrane component 1.	0.964
BCAP31	PGRMC2	ENSCWAP00000017423	ENSCWAP00000027850	B cell receptor associated protein 31.	Progesterone receptor membrane component 2.	0.681
CYP51A1	DHCR24	ENSCWAP00000012453	ENSCWAP00000021642	Cytochrome P450 family 51 subfamily A member 1.	24-dehydrocholesterol reductase.	0.989
CYP51A1	ENSCWAP00000009672	ENSCWAP00000012453	ENSCWAP00000009672	Cytochrome P450 family 51 subfamily A member 1.	annotation not available	0.459
CYP51A1	PGRMC1	ENSCWAP00000012453	ENSCWAP00000001328	Cytochrome P450 family 51 subfamily A member 1.	Progesterone receptor membrane component 1.	0.930
CYP51A1	PGRMC2	ENSCWAP00000012453	ENSCWAP00000027850	Cytochrome P450 family 51 subfamily A member 1.	Progesterone receptor membrane component 2.	0.526
CYP51A1	TMEM97	ENSCWAP00000012453	ENSCWAP00000009151	Cytochrome P450 family 51 subfamily A member 1.	Transmembrane protein 97.	0.435
DHCR24	CYP51A1	ENSCWAP00000021642	ENSCWAP00000012453	24-dehydrocholesterol reductase.	Cytochrome P450 family 51 subfamily A member 1.	0.989
DHCR24	PGRMC1	ENSCWAP00000021642	ENSCWAP00000001328	24-dehydrocholesterol reductase.	Progesterone receptor membrane component 1.	0.848
DHCR24	PGRMC2	ENSCWAP00000021642	ENSCWAP00000027850	24-dehydrocholesterol reductase.	Progesterone receptor membrane component 2.	0.400
ENSCWAP00000009632	ENSCWAP00000009672	ENSCWAP00000009632	ENSCWAP00000009672	annotation not available	annotation not available	0.890
ENSCWAP00000009632	FECH	ENSCWAP00000009632	ENSCWAP00000003233	annotation not available	Ferrochelatase.	0.836
ENSCWAP00000009632	PGRMC1	ENSCWAP00000009632	ENSCWAP00000001328	annotation not available	Progesterone receptor membrane component 1.	0.862
ENSCWAP00000009672	CYP51A1	ENSCWAP00000009672	ENSCWAP00000012453	annotation not available	Cytochrome P450 family 51 subfamily A member 1.	0.459
ENSCWAP00000009672	ENSCWAP00000009632	ENSCWAP00000009672	ENSCWAP00000009632	annotation not available	annotation not available	0.890
ENSCWAP00000009672	FECH	ENSCWAP00000009672	ENSCWAP00000003233	annotation not available	Ferrochelatase.	0.817