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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX25DEAD-box helicase 25. (483 aa)    
Predicted Functional Partners:
GLE1
GLE1 RNA export mediator.
    
 0.989
NUP214
Nucleoporin 214.
    
 0.983
NUP98
Nucleoporin 98.
    
 0.868
MCM3AP
Minichromosome maintenance complex component 3 associated protein.
   
 0.863
ENSCWAP00000013515
annotation not available
  
0.818
RANBP2
RAN binding protein 2.
   
 0.798
CTIF
Cap binding complex dependent translation initiation factor.
    
   0.778
MIF4GD
MIF4G domain containing.
    
   0.778
TDRD7
Tudor domain containing 7.
      
 0.767
SAC3D1
SAC3 domain containing 1.
    
 0.752
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.