STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRIF1Ligand dependent nuclear receptor interacting factor 1. (762 aa)    
Predicted Functional Partners:
CBX5
Chromobox 5.
    
 
 0.944
ENSCWAP00000000349
annotation not available
    
 
 0.860
ENSCWAP00000008845
annotation not available
    
 
 0.860
ENSCWAP00000021198
annotation not available
    
 
 0.860
CBX1
Chromobox 1.
    
 
 0.840
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
    
 
 0.840
PRR14
Proline rich 14.
    
 
 0.820
STAG1
Stromal antigen 1.
      
 0.709
NIPBL
NIPBL cohesin loading factor.
    
 
 0.680
CNOT10
CCR4-NOT transcription complex subunit 10.
      
 0.627
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.