STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRIF1Ligand dependent nuclear receptor interacting factor 1. (762 aa)    
Predicted Functional Partners:
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
    
 
 0.733
RMND5A
Required for meiotic nuclear division 5 homolog A.
      
 0.728
HERC2
HECT and RLD domain containing E3 ubiquitin protein ligase 2.
      
 0.697
RANBP10
RAN binding protein 10.
      
 0.694
CACYBP
Calcyclin binding protein.
      
 0.678
KCNA3
Potassium voltage-gated channel subfamily A member 3.
      
 0.667
NEK4
NIMA related kinase 4.
      
 0.654
SRPK2
SRSF protein kinase 2.
      
 0.645
TMIGD3
Transmembrane and immunoglobulin domain containing 3.
      
 0.620
S100A12
S100 calcium binding protein A12.
    
 
 0.616
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.