STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CXorf56Chromosome X open reading frame 56. (222 aa)    
Predicted Functional Partners:
CACTIN
Cactin, spliceosome C complex subunit.
    
 0.994
PRKRIP1
PRKR interacting protein 1.
   
 
 0.972
SLU7
SLU7 homolog, splicing factor.
   
 
 0.962
SYF2
SYF2 pre-mRNA splicing factor.
     
 0.952
ENSCWAP00000013422
annotation not available
     
 0.952
CDC40
Cell division cycle 40.
     
 0.946
CCDC12
Coiled-coil domain containing 12.
   
 
  0.942
CWC22
CWC22 spliceosome associated protein homolog.
   
 
  0.941
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
     
  0.940
PPIL1
Peptidylprolyl isomerase like 1.
     
  0.940
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.