Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMG6SMG6 nonsense mediated mRNA decay factor. (1411 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
   
 0.999
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
0.993
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.985
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
0.984
RBM8A
RNA binding motif protein 8A.
    
 0.978
ZGRF1
Zinc finger GRF-type containing 1.
   
 0.975
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.961
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.955
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.948
ENSCWAP00000000249
annotation not available
    
 0.946
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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