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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG6SMG6 nonsense mediated mRNA decay factor. (1411 aa)    
Predicted Functional Partners:
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
   
 0.997
UPF1
UPF1 RNA helicase and ATPase.
    
 0.994
RBM8A
RNA binding motif protein 8A.
    
 0.986
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.983
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
0.982
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
0.980
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.979
CASC3
CASC3 exon junction complex subunit.
   
 
 0.963
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.962
PABPC1
poly(A) binding protein cytoplasmic 1.
    
 0.957
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.