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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS39VPS39 subunit of HOPS complex. (886 aa)    
Predicted Functional Partners:
VPS41
VPS41 subunit of HOPS complex.
   
 0.999
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.999
ENSCWAP00000018469
annotation not available
   
 0.999
VPS11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
STX17
Syntaxin 17.
   
 0.998
ENSCWAP00000020399
annotation not available
   
 0.997
VPS8
VPS8 subunit of CORVET complex.
   
 0.996
ENSCWAP00000013486
annotation not available
    
 
 0.985
VAMP8
Vesicle associated membrane protein 8.
    
 
 0.982
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.