ENSCWAP00000001559 protein (Catagonus wagneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCWAP00000001559

annotation not available (288 aa)

Predicted Functional Partners:

TMED10

0.980

TMED2

0.974

TMED3

0.930

SURF4

0.920

TMED5

0.886

GORASP2

0.833

TMED1

0.829

NAGLU

0.826

CHST8

0.809

TICAM2

0.789

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHST8	ENSCWAP00000001559	ENSCWAP00000000983	ENSCWAP00000001559	Carbohydrate sulfotransferase 8.	annotation not available	0.809
CHST8	TMED1	ENSCWAP00000000983	ENSCWAP00000025914	Carbohydrate sulfotransferase 8.	Transmembrane p24 trafficking protein 1.	0.765
CHST8	TMED2	ENSCWAP00000000983	ENSCWAP00000022742	Carbohydrate sulfotransferase 8.	Transmembrane p24 trafficking protein 2.	0.900
CHST8	TMED5	ENSCWAP00000000983	ENSCWAP00000013604	Carbohydrate sulfotransferase 8.	Transmembrane p24 trafficking protein 5.	0.511
ENSCWAP00000001559	CHST8	ENSCWAP00000001559	ENSCWAP00000000983	annotation not available	Carbohydrate sulfotransferase 8.	0.809
ENSCWAP00000001559	GORASP2	ENSCWAP00000001559	ENSCWAP00000011174	annotation not available	Golgi reassembly stacking protein 2.	0.833
ENSCWAP00000001559	NAGLU	ENSCWAP00000001559	ENSCWAP00000019402	annotation not available	N-acetyl-alpha-glucosaminidase.	0.826
ENSCWAP00000001559	SURF4	ENSCWAP00000001559	ENSCWAP00000011257	annotation not available	Surfeit 4.	0.920
ENSCWAP00000001559	TICAM2	ENSCWAP00000001559	ENSCWAP00000001815	annotation not available	Toll like receptor adaptor molecule 2.	0.789
ENSCWAP00000001559	TMED1	ENSCWAP00000001559	ENSCWAP00000025914	annotation not available	Transmembrane p24 trafficking protein 1.	0.829
ENSCWAP00000001559	TMED10	ENSCWAP00000001559	ENSCWAP00000028019	annotation not available	Transmembrane p24 trafficking protein 10.	0.980
ENSCWAP00000001559	TMED2	ENSCWAP00000001559	ENSCWAP00000022742	annotation not available	Transmembrane p24 trafficking protein 2.	0.974
ENSCWAP00000001559	TMED3	ENSCWAP00000001559	ENSCWAP00000015137	annotation not available	Transmembrane p24 trafficking protein 3.	0.930
ENSCWAP00000001559	TMED5	ENSCWAP00000001559	ENSCWAP00000013604	annotation not available	Transmembrane p24 trafficking protein 5.	0.886
GORASP2	ENSCWAP00000001559	ENSCWAP00000011174	ENSCWAP00000001559	Golgi reassembly stacking protein 2.	annotation not available	0.833
GORASP2	SURF4	ENSCWAP00000011174	ENSCWAP00000011257	Golgi reassembly stacking protein 2.	Surfeit 4.	0.752
GORASP2	TICAM2	ENSCWAP00000011174	ENSCWAP00000001815	Golgi reassembly stacking protein 2.	Toll like receptor adaptor molecule 2.	0.877
GORASP2	TMED10	ENSCWAP00000011174	ENSCWAP00000028019	Golgi reassembly stacking protein 2.	Transmembrane p24 trafficking protein 10.	0.899
GORASP2	TMED2	ENSCWAP00000011174	ENSCWAP00000022742	Golgi reassembly stacking protein 2.	Transmembrane p24 trafficking protein 2.	0.960
GORASP2	TMED3	ENSCWAP00000011174	ENSCWAP00000015137	Golgi reassembly stacking protein 2.	Transmembrane p24 trafficking protein 3.	0.708