Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASCL5Achaete-scute family bHLH transcription factor 5. (178 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
    
 0.857
TCF3
Transcription factor 3.
    
 0.857
TCF12
Transcription factor 12.
    
 0.857
ID4
Inhibitor of DNA binding 4, HLH protein.
    
 
 0.792
LDB1
LIM domain binding 1.
    
 0.606
LDB2
LIM domain binding 2.
    
 0.606
BHLHE23
Basic helix-loop-helix family member e23.
    
 
 0.598
BHLHA9
Basic helix-loop-helix family member a9.
      
 0.583
MAIP1
Matrix AAA peptidase interacting protein 1.
      
 0.580
RUNX1
RUNX family transcription factor 1.
    
 0.521
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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