RBMS1 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBMS1

RNA binding motif single stranded interacting protein 1. (406 aa)

Predicted Functional Partners:

RBMS3

0.850

MRRF

0.828

RRBP1

0.825

PRR3

0.813

STX7

0.811

RIDA

0.806

PQBP1

0.800

RFX5

0.794

PPIF

0.789

SUGP1

0.763

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MRRF	PPIF	ENSCWAP00000024593	ENSCWAP00000022330	Mitochondrial ribosome recycling factor.	Peptidylprolyl isomerase F.	0.787
MRRF	RBMS1	ENSCWAP00000024593	ENSCWAP00000001600	Mitochondrial ribosome recycling factor.	RNA binding motif single stranded interacting protein 1.	0.828
MRRF	RBMS3	ENSCWAP00000024593	ENSCWAP00000024903	Mitochondrial ribosome recycling factor.	RNA binding motif single stranded interacting protein 3.	0.510
PPIF	MRRF	ENSCWAP00000022330	ENSCWAP00000024593	Peptidylprolyl isomerase F.	Mitochondrial ribosome recycling factor.	0.787
PPIF	RBMS1	ENSCWAP00000022330	ENSCWAP00000001600	Peptidylprolyl isomerase F.	RNA binding motif single stranded interacting protein 1.	0.789
PPIF	SUGP1	ENSCWAP00000022330	ENSCWAP00000010815	Peptidylprolyl isomerase F.	SURP and G-patch domain containing 1.	0.401
PQBP1	RBMS1	ENSCWAP00000015056	ENSCWAP00000001600	Polyglutamine binding protein 1.	RNA binding motif single stranded interacting protein 1.	0.800
PQBP1	RBMS3	ENSCWAP00000015056	ENSCWAP00000024903	Polyglutamine binding protein 1.	RNA binding motif single stranded interacting protein 3.	0.461
PQBP1	RIDA	ENSCWAP00000015056	ENSCWAP00000017733	Polyglutamine binding protein 1.	Reactive intermediate imine deaminase A homolog.	0.871
PQBP1	SUGP1	ENSCWAP00000015056	ENSCWAP00000010815	Polyglutamine binding protein 1.	SURP and G-patch domain containing 1.	0.778
PRR3	RBMS1	ENSCWAP00000009375	ENSCWAP00000001600	Proline rich 3.	RNA binding motif single stranded interacting protein 1.	0.813
PRR3	RBMS3	ENSCWAP00000009375	ENSCWAP00000024903	Proline rich 3.	RNA binding motif single stranded interacting protein 3.	0.492
PRR3	SUGP1	ENSCWAP00000009375	ENSCWAP00000010815	Proline rich 3.	SURP and G-patch domain containing 1.	0.623
RBMS1	MRRF	ENSCWAP00000001600	ENSCWAP00000024593	RNA binding motif single stranded interacting protein 1.	Mitochondrial ribosome recycling factor.	0.828
RBMS1	PPIF	ENSCWAP00000001600	ENSCWAP00000022330	RNA binding motif single stranded interacting protein 1.	Peptidylprolyl isomerase F.	0.789
RBMS1	PQBP1	ENSCWAP00000001600	ENSCWAP00000015056	RNA binding motif single stranded interacting protein 1.	Polyglutamine binding protein 1.	0.800
RBMS1	PRR3	ENSCWAP00000001600	ENSCWAP00000009375	RNA binding motif single stranded interacting protein 1.	Proline rich 3.	0.813
RBMS1	RBMS3	ENSCWAP00000001600	ENSCWAP00000024903	RNA binding motif single stranded interacting protein 1.	RNA binding motif single stranded interacting protein 3.	0.850
RBMS1	RFX5	ENSCWAP00000001600	ENSCWAP00000008147	RNA binding motif single stranded interacting protein 1.	Regulatory factor X5.	0.794
RBMS1	RIDA	ENSCWAP00000001600	ENSCWAP00000017733	RNA binding motif single stranded interacting protein 1.	Reactive intermediate imine deaminase A homolog.	0.806