STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGGT1BProtein geranylgeranyltransferase type I subunit beta. (377 aa)    
Predicted Functional Partners:
FNTA
Farnesyltransferase, CAAX box, alpha.
    
 0.999
RAP1A
RAP1A, member of RAS oncogene family.
    
 
 0.809
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
      
 0.749
HACD2
3-hydroxyacyl-CoA dehydratase 2.
 
   
 0.651
STXBP5
Syntaxin binding protein 5.
      
 0.621
DHCR7
7-dehydrocholesterol reductase.
      
 0.604
PAN3
poly(A) specific ribonuclease subunit PAN3.
      
 0.602
ANGPTL8
Angiopoietin like 8.
      
 0.560
GGPS1
Geranylgeranyl diphosphate synthase 1.
      
 0.548
PPCDC
Phosphopantothenoylcysteine decarboxylase.
      
 0.524
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.