Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PGGT1BProtein geranylgeranyltransferase type I subunit beta. (377 aa)    
Predicted Functional Partners:
FNTA
Farnesyltransferase, CAAX box, alpha.
    
 0.999
AMMECR1
AMMECR nuclear protein 1.
    
   0.862
AMMECR1L
AMMECR1 like.
    
   0.862
CHURC1
Churchill domain containing 1.
    
 
 0.836
ENSCWAP00000029447
annotation not available
    
 
 0.836
HEYL
Hes related family bHLH transcription factor with YRPW motif like.
    
 
 0.810
HEY2
Hes related family bHLH transcription factor with YRPW motif 2.
    
 
 0.810
HEY1
Hes related family bHLH transcription factor with YRPW motif 1.
    
 
 0.810
TSKS
Testis specific serine kinase substrate.
    
   0.766
RAP1A
RAP1A, member of RAS oncogene family.
    
 
 0.713
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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