STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPCAL4Hippocalcin like 4. (191 aa)    
Predicted Functional Partners:
FAM131C
Family with sequence similarity 131 member C.
    
   0.828
PI4KB
Phosphatidylinositol 4-kinase beta.
    
 
 0.812
CFAP299
Cilia and flagella associated protein 299.
    
 0.750
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.707
KCND2
Potassium voltage-gated channel subfamily D member 2.
    
 0.681
KCND3
Potassium voltage-gated channel subfamily D member 3.
    
 0.681
KCND1
Potassium voltage-gated channel subfamily D member 1.
    
 0.681
RTN1
Reticulon 1.
   
  
 0.629
LRCH1
Leucine rich repeats and calponin homology domain containing 1.
    
 
 0.617
MAPT
Microtubule associated protein tau.
   
 
 0.605
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.