Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FBXO47F-box protein 47. (451 aa)    
Predicted Functional Partners:
FBXO48
F-box protein 48.
      
 0.871
C1orf109
Chromosome 1 open reading frame 109.
   
    0.744
LMO7
LIM domain 7.
      
 0.722
ENSCWAP00000029374
annotation not available
   
    0.718
SKP1
S-phase kinase associated protein 1.
    
 
 0.711
SPO11
SPO11 initiator of meiotic double stranded breaks.
   
  
 0.684
C15orf40
Chromosome 15 open reading frame 40.
   
    0.680
ECT2L
Epithelial cell transforming 2 like.
      
 0.679
LIX1L
Limb and CNS expressed 1 like.
   
    0.674
LIX1
Limb and CNS expressed 1.
   
    0.674
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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