STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B3Splicing factor 3b subunit 3. (1217 aa)    
Predicted Functional Partners:
SF3B5
Splicing factor 3b subunit 5.
   
 0.999
PRPF8
pre-mRNA processing factor 8.
   
 0.999
PRPF6
pre-mRNA processing factor 6.
   
 0.999
MFAP1
Microfibril associated protein 1.
    
 0.999
SF3B6
Splicing factor 3b subunit 6.
    
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
SF3A3
Splicing factor 3a subunit 3.
   
 0.999
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
SF3B1
Splicing factor 3b subunit 1.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
   
 0.999
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.