STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABL6RAB, member RAS oncogene family like 6. (455 aa)    
Predicted Functional Partners:
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.905
TRAPPC8
Trafficking protein particle complex 8.
    
 0.881
TRAPPC1
Trafficking protein particle complex 1.
    
 0.880
ENSCWAP00000012587
annotation not available
    
 0.877
TRAPPC5
Trafficking protein particle complex 5.
    
 0.863
TRAPPC2
Trafficking protein particle complex 2.
    
 0.858
ENSCWAP00000020399
annotation not available
    
 
 0.845
TRAPPC3
Trafficking protein particle complex 3.
    
 0.837
TRAPPC3L
Trafficking protein particle complex 3 like.
    
 0.837
VPS52
VPS52 subunit of GARP complex.
   
 0.834
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.