RABL6 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RABL6

RAB, member RAS oncogene family like 6. (455 aa)

Predicted Functional Partners:

ENSCWAP00000020399

0.861

RABGGTA

0.859

TRAPPC8

0.830

STX5

0.824

USO1

0.822

TRAPPC1

0.804

TRAPPC5

0.800

ENSCWAP00000018469

0.796

GBF1

0.780

TRAPPC3

0.779

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000018469	ENSCWAP00000020399	ENSCWAP00000018469	ENSCWAP00000020399	annotation not available	annotation not available	0.852
ENSCWAP00000018469	RABL6	ENSCWAP00000018469	ENSCWAP00000001781	annotation not available	RAB, member RAS oncogene family like 6.	0.796
ENSCWAP00000020399	ENSCWAP00000018469	ENSCWAP00000020399	ENSCWAP00000018469	annotation not available	annotation not available	0.852
ENSCWAP00000020399	RABL6	ENSCWAP00000020399	ENSCWAP00000001781	annotation not available	RAB, member RAS oncogene family like 6.	0.861
GBF1	RABL6	ENSCWAP00000018341	ENSCWAP00000001781	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	RAB, member RAS oncogene family like 6.	0.780
GBF1	USO1	ENSCWAP00000018341	ENSCWAP00000024257	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	USO1 vesicle transport factor.	0.879
RABGGTA	RABL6	ENSCWAP00000019379	ENSCWAP00000001781	Rab geranylgeranyltransferase subunit alpha.	RAB, member RAS oncogene family like 6.	0.859
RABL6	ENSCWAP00000018469	ENSCWAP00000001781	ENSCWAP00000018469	RAB, member RAS oncogene family like 6.	annotation not available	0.796
RABL6	ENSCWAP00000020399	ENSCWAP00000001781	ENSCWAP00000020399	RAB, member RAS oncogene family like 6.	annotation not available	0.861
RABL6	GBF1	ENSCWAP00000001781	ENSCWAP00000018341	RAB, member RAS oncogene family like 6.	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.780
RABL6	RABGGTA	ENSCWAP00000001781	ENSCWAP00000019379	RAB, member RAS oncogene family like 6.	Rab geranylgeranyltransferase subunit alpha.	0.859
RABL6	STX5	ENSCWAP00000001781	ENSCWAP00000024100	RAB, member RAS oncogene family like 6.	Syntaxin 5.	0.824
RABL6	TRAPPC1	ENSCWAP00000001781	ENSCWAP00000009251	RAB, member RAS oncogene family like 6.	Trafficking protein particle complex 1.	0.804
RABL6	TRAPPC3	ENSCWAP00000001781	ENSCWAP00000010878	RAB, member RAS oncogene family like 6.	Trafficking protein particle complex 3.	0.779
RABL6	TRAPPC5	ENSCWAP00000001781	ENSCWAP00000019039	RAB, member RAS oncogene family like 6.	Trafficking protein particle complex 5.	0.800
RABL6	TRAPPC8	ENSCWAP00000001781	ENSCWAP00000023276	RAB, member RAS oncogene family like 6.	Trafficking protein particle complex 8.	0.830
RABL6	USO1	ENSCWAP00000001781	ENSCWAP00000024257	RAB, member RAS oncogene family like 6.	USO1 vesicle transport factor.	0.822
STX5	RABL6	ENSCWAP00000024100	ENSCWAP00000001781	Syntaxin 5.	RAB, member RAS oncogene family like 6.	0.824
STX5	TRAPPC1	ENSCWAP00000024100	ENSCWAP00000009251	Syntaxin 5.	Trafficking protein particle complex 1.	0.747
STX5	TRAPPC3	ENSCWAP00000024100	ENSCWAP00000010878	Syntaxin 5.	Trafficking protein particle complex 3.	0.741