STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM6Tripartite motif containing 6. (508 aa)    
Predicted Functional Partners:
ILK
Integrin linked kinase.
    
 
 0.698
COL17A1
Collagen type XVII alpha 1 chain.
    
 
 0.695
UBB
Ubiquitin B.
    
 0.684
UBD
Ubiquitin D.
    
 0.680
FERMT1
Fermitin family member 1.
      
 0.675
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
   
 0.668
ENSCWAP00000007885
annotation not available
   
 0.666
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 
 0.655
RAI2
Retinoic acid induced 2.
    
 
 0.647
ICOS
Inducible T cell costimulator.
    
 0.624
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.