STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPTLC1Serine palmitoyltransferase long chain base subunit 1. (473 aa)    
Predicted Functional Partners:
SPTSSA
Serine palmitoyltransferase small subunit A.
    
 0.998
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
  
0.995
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
  
0.993
SPTSSB
Serine palmitoyltransferase small subunit B.
    
 0.987
ISM1
Isthmin 1.
   
 0.978
ORMDL3
ORMDL sphingolipid biosynthesis regulator 3.
    
 0.959
KDSR
3-ketodihydrosphingosine reductase.
     
 0.957
ORMDL1
ORMDL sphingolipid biosynthesis regulator 1.
    
 
 0.940
MTOR
Mechanistic target of rapamycin kinase.
    
 0.930
ORMDL2
ORMDL sphingolipid biosynthesis regulator 2.
    
 
 0.922
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.