STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPTLC1Serine palmitoyltransferase long chain base subunit 1. (473 aa)    
Predicted Functional Partners:
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
  
0.998
ORMDL3
ORMDL sphingolipid biosynthesis regulator 3.
    
 0.997
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
  
0.997
SPTSSA
Serine palmitoyltransferase small subunit A.
    
 0.990
ORMDL1
ORMDL sphingolipid biosynthesis regulator 1.
    
 0.986
SPTSSB
Serine palmitoyltransferase small subunit B.
    
 0.982
ORMDL2
ORMDL sphingolipid biosynthesis regulator 2.
    
 0.982
ISM1
Isthmin 1.
   
 0.982
KDSR
3-ketodihydrosphingosine reductase.
     
 0.964
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
    
 0.920
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.