STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD27Ankyrin repeat domain 27. (1055 aa)    
Predicted Functional Partners:
VPS35
VPS35 retromer complex component.
    
 
 0.957
RAB32
RAB32, member RAS oncogene family.
    
 
 0.948
RAB38
RAB38, member RAS oncogene family.
    
 
 0.894
RAB21
RAB21, member RAS oncogene family.
    
 0.878
ENSCWAP00000013964
annotation not available
    
 
 0.839
ENSCWAP00000020836
annotation not available
    
 
 0.839
NFKBIA
NFKB inhibitor alpha.
    
   0.810
RABEP1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.806
RABEP2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.806
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.782
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.