Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YOD1YOD1 deubiquitinase. (348 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.997
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.953
PLAA
Phospholipase A2 activating protein.
    
 
 0.951
SPATA5L1
Spermatogenesis associated 5 like 1.
   
 0.933
SPATA5
Spermatogenesis associated 5.
   
 0.933
UBE4B
Ubiquitination factor E4B.
    
 
 0.927
UBXN6
UBX domain protein 6.
    
 
 0.927
UBB
Ubiquitin B.
    
 
 0.926
NSFL1C
NSFL1 cofactor.
    
 
 0.909
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.894
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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