STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YOD1YOD1 deubiquitinase. (348 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.994
PLAA
Phospholipase A2 activating protein.
    
 
 0.988
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.985
UBB
Ubiquitin B.
    
 
 0.977
NSFL1C
NSFL1 cofactor.
   
 
 0.963
SPATA5L1
Spermatogenesis associated 5 like 1.
   
 0.956
SPATA5
Spermatogenesis associated 5.
   
 0.956
UBE4B
Ubiquitination factor E4B.
    
 
 0.955
UBE4A
Ubiquitination factor E4A.
    
 
 0.949
UBXN2B
UBX domain protein 2B.
   
 
 0.949
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.