STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1orf116Chromosome 1 open reading frame 116. (607 aa)    
Predicted Functional Partners:
HOMER1
Homer scaffold protein 1.
    
   0.948
ENSCWAP00000025974
annotation not available
    
   0.829
NKX3-1
NK3 homeobox 1.
      
 0.622
INIP
INTS3 and NABP interacting protein.
      
 0.587
PRR15L
Proline rich 15 like.
      
 0.585
C9orf152
Chromosome 9 open reading frame 152.
      
 0.585
KIAA0040
KIAA0040.
      
 0.584
MGAT4B
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B.
      
 0.535
PAK1IP1
PAK1 interacting protein 1.
      
 0.526
LIN7B
Lin-7 homolog B, crumbs cell polarity complex component.
      
 0.491
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.