SH3BGRL protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SH3BGRL

SH3 domain binding glutamate rich protein like. (114 aa)

Predicted Functional Partners:

EGFR

0.939

ACSS3

0.780

ENSCWAP00000005054

0.759

RPS20

0.759

ENSCWAP00000013626

0.759

ENSCWAP00000017756

0.759

TMEM150A

0.754

SNRPF

0.744

ETFA

0.717

HSPH1

0.690

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSS3	ETFA	ENSCWAP00000013259	ENSCWAP00000013862	acyl-CoA synthetase short chain family member 3.	Electron transfer flavoprotein subunit alpha.	0.861
ACSS3	SH3BGRL	ENSCWAP00000013259	ENSCWAP00000001948	acyl-CoA synthetase short chain family member 3.	SH3 domain binding glutamate rich protein like.	0.780
EGFR	SH3BGRL	ENSCWAP00000018553	ENSCWAP00000001948	Epidermal growth factor receptor.	SH3 domain binding glutamate rich protein like.	0.939
ENSCWAP00000005054	SH3BGRL	ENSCWAP00000005054	ENSCWAP00000001948	annotation not available	SH3 domain binding glutamate rich protein like.	0.759
ENSCWAP00000013626	SH3BGRL	ENSCWAP00000013626	ENSCWAP00000001948	annotation not available	SH3 domain binding glutamate rich protein like.	0.759
ENSCWAP00000017756	SH3BGRL	ENSCWAP00000017756	ENSCWAP00000001948	annotation not available	SH3 domain binding glutamate rich protein like.	0.759
ETFA	ACSS3	ENSCWAP00000013862	ENSCWAP00000013259	Electron transfer flavoprotein subunit alpha.	acyl-CoA synthetase short chain family member 3.	0.861
ETFA	SH3BGRL	ENSCWAP00000013862	ENSCWAP00000001948	Electron transfer flavoprotein subunit alpha.	SH3 domain binding glutamate rich protein like.	0.717
HSPH1	SH3BGRL	ENSCWAP00000022274	ENSCWAP00000001948	Heat shock protein family H (Hsp110) member 1.	SH3 domain binding glutamate rich protein like.	0.690
HSPH1	TMEM150A	ENSCWAP00000022274	ENSCWAP00000005509	Heat shock protein family H (Hsp110) member 1.	Transmembrane protein 150A.	0.760
RPS20	SH3BGRL	ENSCWAP00000010943	ENSCWAP00000001948	Ribosomal protein S20.	SH3 domain binding glutamate rich protein like.	0.759
SH3BGRL	ACSS3	ENSCWAP00000001948	ENSCWAP00000013259	SH3 domain binding glutamate rich protein like.	acyl-CoA synthetase short chain family member 3.	0.780
SH3BGRL	EGFR	ENSCWAP00000001948	ENSCWAP00000018553	SH3 domain binding glutamate rich protein like.	Epidermal growth factor receptor.	0.939
SH3BGRL	ENSCWAP00000005054	ENSCWAP00000001948	ENSCWAP00000005054	SH3 domain binding glutamate rich protein like.	annotation not available	0.759
SH3BGRL	ENSCWAP00000013626	ENSCWAP00000001948	ENSCWAP00000013626	SH3 domain binding glutamate rich protein like.	annotation not available	0.759
SH3BGRL	ENSCWAP00000017756	ENSCWAP00000001948	ENSCWAP00000017756	SH3 domain binding glutamate rich protein like.	annotation not available	0.759
SH3BGRL	ETFA	ENSCWAP00000001948	ENSCWAP00000013862	SH3 domain binding glutamate rich protein like.	Electron transfer flavoprotein subunit alpha.	0.717
SH3BGRL	HSPH1	ENSCWAP00000001948	ENSCWAP00000022274	SH3 domain binding glutamate rich protein like.	Heat shock protein family H (Hsp110) member 1.	0.690
SH3BGRL	RPS20	ENSCWAP00000001948	ENSCWAP00000010943	SH3 domain binding glutamate rich protein like.	Ribosomal protein S20.	0.759
SH3BGRL	SNRPF	ENSCWAP00000001948	ENSCWAP00000022633	SH3 domain binding glutamate rich protein like.	Small nuclear ribonucleoprotein polypeptide F.	0.744