SIL1 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

SIL1

SIL1 nucleotide exchange factor. (454 aa)

Predicted Functional Partners:

HYOU1

0.995

HSPA5

0.984

RPL23A

0.944

ENSCWAP00000013956

0.944

RPL11

0.944

ENSCWAP00000011123

0.942

ENSCWAP00000018117

0.942

MRPL17

0.937

MRPL12

0.937

RPL23

0.929

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000011123	ENSCWAP00000013956	ENSCWAP00000011123	ENSCWAP00000013956	annotation not available	annotation not available	0.998
ENSCWAP00000011123	ENSCWAP00000018117	ENSCWAP00000011123	ENSCWAP00000018117	annotation not available	annotation not available	0.995
ENSCWAP00000011123	HSPA5	ENSCWAP00000011123	ENSCWAP00000020567	annotation not available	Heat shock protein family A (Hsp70) member 5.	0.429
ENSCWAP00000011123	RPL11	ENSCWAP00000011123	ENSCWAP00000020354	annotation not available	Ribosomal protein L11.	0.998
ENSCWAP00000011123	RPL23	ENSCWAP00000011123	ENSCWAP00000001702	annotation not available	Ribosomal protein L23.	0.998
ENSCWAP00000011123	RPL23A	ENSCWAP00000011123	ENSCWAP00000007341	annotation not available	Ribosomal protein L23a.	0.998
ENSCWAP00000011123	SIL1	ENSCWAP00000011123	ENSCWAP00000001957	annotation not available	SIL1 nucleotide exchange factor.	0.942
ENSCWAP00000013956	ENSCWAP00000011123	ENSCWAP00000013956	ENSCWAP00000011123	annotation not available	annotation not available	0.998
ENSCWAP00000013956	ENSCWAP00000018117	ENSCWAP00000013956	ENSCWAP00000018117	annotation not available	annotation not available	0.998
ENSCWAP00000013956	HYOU1	ENSCWAP00000013956	ENSCWAP00000019001	annotation not available	Hypoxia up-regulated 1.	0.421
ENSCWAP00000013956	MRPL12	ENSCWAP00000013956	ENSCWAP00000025693	annotation not available	Mitochondrial ribosomal protein L12.	0.986
ENSCWAP00000013956	MRPL17	ENSCWAP00000013956	ENSCWAP00000007813	annotation not available	Mitochondrial ribosomal protein L17.	0.986
ENSCWAP00000013956	RPL11	ENSCWAP00000013956	ENSCWAP00000020354	annotation not available	Ribosomal protein L11.	0.999
ENSCWAP00000013956	RPL23	ENSCWAP00000013956	ENSCWAP00000001702	annotation not available	Ribosomal protein L23.	0.999
ENSCWAP00000013956	RPL23A	ENSCWAP00000013956	ENSCWAP00000007341	annotation not available	Ribosomal protein L23a.	0.999
ENSCWAP00000013956	SIL1	ENSCWAP00000013956	ENSCWAP00000001957	annotation not available	SIL1 nucleotide exchange factor.	0.944
ENSCWAP00000018117	ENSCWAP00000011123	ENSCWAP00000018117	ENSCWAP00000011123	annotation not available	annotation not available	0.995
ENSCWAP00000018117	ENSCWAP00000013956	ENSCWAP00000018117	ENSCWAP00000013956	annotation not available	annotation not available	0.998
ENSCWAP00000018117	HSPA5	ENSCWAP00000018117	ENSCWAP00000020567	annotation not available	Heat shock protein family A (Hsp70) member 5.	0.429
ENSCWAP00000018117	RPL11	ENSCWAP00000018117	ENSCWAP00000020354	annotation not available	Ribosomal protein L11.	0.998