ENSCWAP00000002066 protein (Catagonus wagneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	BRF2	ENSCWAP00000006645	ENSCWAP00000011362	BRF1 RNA polymerase III transcription initiation factor subunit.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.967
BRF1	CRCP	ENSCWAP00000006645	ENSCWAP00000008424	BRF1 RNA polymerase III transcription initiation factor subunit.	CGRP receptor component.	0.968
BRF1	ENSCWAP00000002066	ENSCWAP00000006645	ENSCWAP00000002066	BRF1 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.999
BRF1	GTF3C1	ENSCWAP00000006645	ENSCWAP00000019031	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.966
BRF1	GTF3C3	ENSCWAP00000006645	ENSCWAP00000009433	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.992
BRF1	GTF3C5	ENSCWAP00000006645	ENSCWAP00000006510	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.951
BRF1	POLR3A	ENSCWAP00000006645	ENSCWAP00000022797	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit A.	0.977
BRF1	POLR3C	ENSCWAP00000006645	ENSCWAP00000015934	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit C.	0.973
BRF1	TBP	ENSCWAP00000006645	ENSCWAP00000013802	BRF1 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein.	0.979
BRF1	TBPL2	ENSCWAP00000006645	ENSCWAP00000012821	BRF1 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein like 2.	0.979
BRF2	BRF1	ENSCWAP00000011362	ENSCWAP00000006645	BRF2 RNA polymerase III transcription initiation factor subunit.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.967
BRF2	CRCP	ENSCWAP00000011362	ENSCWAP00000008424	BRF2 RNA polymerase III transcription initiation factor subunit.	CGRP receptor component.	0.950
BRF2	ENSCWAP00000002066	ENSCWAP00000011362	ENSCWAP00000002066	BRF2 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.999
BRF2	GTF3C1	ENSCWAP00000011362	ENSCWAP00000019031	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.776
BRF2	GTF3C3	ENSCWAP00000011362	ENSCWAP00000009433	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.971
BRF2	GTF3C5	ENSCWAP00000011362	ENSCWAP00000006510	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.889
BRF2	POLR3A	ENSCWAP00000011362	ENSCWAP00000022797	BRF2 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit A.	0.975
BRF2	POLR3C	ENSCWAP00000011362	ENSCWAP00000015934	BRF2 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit C.	0.963
BRF2	TBP	ENSCWAP00000011362	ENSCWAP00000013802	BRF2 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein.	0.959
BRF2	TBPL2	ENSCWAP00000011362	ENSCWAP00000012821	BRF2 RNA polymerase III transcription initiation factor subunit.	TATA-box binding protein like 2.	0.959