STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCARF1Scavenger receptor class F member 1. (824 aa)    
Predicted Functional Partners:
GULP1
GULP PTB domain containing engulfment adaptor 1.
    
 0.919
C1QA
Complement C1q A chain.
     
  0.890
C1QC
Complement C1q C chain.
   
 
  0.890
C1QB
Complement C1q B chain.
     
  0.844
COL3A1
Collagen type III alpha 1 chain.
      
 0.786
TTR
Transthyretin.
   
  
 0.776
TMEM19
Transmembrane protein 19.
      
 0.754
SLC46A1
Solute carrier family 46 member 1.
      
 0.695
INO80D
INO80 complex subunit D.
     
 0.636
SLC30A5
Solute carrier family 30 member 5.
      
 0.621
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.