UBL4B protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBL4B

Ubiquitin like 4B. (166 aa)

Predicted Functional Partners:

NBR1

0.970

BAG6

0.968

GET4

0.968

TRIP12

0.953

GET3

0.953

SGTA

0.952

ENSCWAP00000026989

0.936

MYSM1

0.934

GAK

0.913

NPLOC4

0.903

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	GET3	ENSCWAP00000006464	ENSCWAP00000011046	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 3, ATPase.	0.985
BAG6	GET4	ENSCWAP00000006464	ENSCWAP00000022288	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 4.	0.994
BAG6	MYSM1	ENSCWAP00000006464	ENSCWAP00000019408	BCL2 associated athanogene 6.	Myb like, SWIRM and MPN domains 1.	0.513
BAG6	SGTA	ENSCWAP00000006464	ENSCWAP00000010228	BCL2 associated athanogene 6.	Small glutamine rich tetratricopeptide repeat containing alpha.	0.992
BAG6	UBL4B	ENSCWAP00000006464	ENSCWAP00000002079	BCL2 associated athanogene 6.	Ubiquitin like 4B.	0.968
ENSCWAP00000026989	MYSM1	ENSCWAP00000026989	ENSCWAP00000019408	annotation not available	Myb like, SWIRM and MPN domains 1.	0.843
ENSCWAP00000026989	NPLOC4	ENSCWAP00000026989	ENSCWAP00000025893	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.995
ENSCWAP00000026989	UBL4B	ENSCWAP00000026989	ENSCWAP00000002079	annotation not available	Ubiquitin like 4B.	0.936
GAK	MYSM1	ENSCWAP00000005797	ENSCWAP00000019408	Cyclin G associated kinase.	Myb like, SWIRM and MPN domains 1.	0.872
GAK	NBR1	ENSCWAP00000005797	ENSCWAP00000025305	Cyclin G associated kinase.	NBR1 autophagy cargo receptor.	0.409
GAK	UBL4B	ENSCWAP00000005797	ENSCWAP00000002079	Cyclin G associated kinase.	Ubiquitin like 4B.	0.913
GET3	BAG6	ENSCWAP00000011046	ENSCWAP00000006464	Guided entry of tail-anchored proteins factor 3, ATPase.	BCL2 associated athanogene 6.	0.985
GET3	GET4	ENSCWAP00000011046	ENSCWAP00000022288	Guided entry of tail-anchored proteins factor 3, ATPase.	Guided entry of tail-anchored proteins factor 4.	0.995
GET3	MYSM1	ENSCWAP00000011046	ENSCWAP00000019408	Guided entry of tail-anchored proteins factor 3, ATPase.	Myb like, SWIRM and MPN domains 1.	0.758
GET3	SGTA	ENSCWAP00000011046	ENSCWAP00000010228	Guided entry of tail-anchored proteins factor 3, ATPase.	Small glutamine rich tetratricopeptide repeat containing alpha.	0.963
GET3	UBL4B	ENSCWAP00000011046	ENSCWAP00000002079	Guided entry of tail-anchored proteins factor 3, ATPase.	Ubiquitin like 4B.	0.953
GET4	BAG6	ENSCWAP00000022288	ENSCWAP00000006464	Guided entry of tail-anchored proteins factor 4.	BCL2 associated athanogene 6.	0.994
GET4	GET3	ENSCWAP00000022288	ENSCWAP00000011046	Guided entry of tail-anchored proteins factor 4.	Guided entry of tail-anchored proteins factor 3, ATPase.	0.995
GET4	SGTA	ENSCWAP00000022288	ENSCWAP00000010228	Guided entry of tail-anchored proteins factor 4.	Small glutamine rich tetratricopeptide repeat containing alpha.	0.996
GET4	UBL4B	ENSCWAP00000022288	ENSCWAP00000002079	Guided entry of tail-anchored proteins factor 4.	Ubiquitin like 4B.	0.968