STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM4SF5Transmembrane 4 L six family member 5. (196 aa)    
Predicted Functional Partners:
C11orf54
Chromosome 11 open reading frame 54.
      
 0.694
CASTOR1
Cytosolic arginine sensor for mTORC1 subunit 1.
    
 
 0.669
SLC38A9
Solute carrier family 38 member 9.
    
 
 0.651
GLYCTK
Glycerate kinase.
      
 0.629
LRCH4
Leucine rich repeats and calponin homology domain containing 4.
      
 0.614
FABP1
Fatty acid binding protein 1.
   
    0.608
VSTM5
V-set and transmembrane domain containing 5.
      
 0.597
TMCC2
Transmembrane and coiled-coil domain family 2.
      
 0.591
A1CF
APOBEC1 complementation factor.
   
    0.589
TSPAN1
Tetraspanin 1.
      
 0.585
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.