Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3CMicrotubule associated protein 1 light chain 3 gamma. (136 aa)    
Predicted Functional Partners:
ATG4B
Autophagy related 4B cysteine peptidase.
   
 0.998
SQSTM1
Sequestosome 1.
   
 0.995
ATG7
Autophagy related 7.
   
 0.995
ATG3
Autophagy related 3.
   
 0.995
ATG4A
Autophagy related 4A cysteine peptidase.
   
 0.989
NBR1
NBR1 autophagy cargo receptor.
   
 0.986
ULK1
Unc-51 like autophagy activating kinase 1.
   
 0.983
TAX1BP1
Tax1 binding protein 1.
    
 0.978
ENSCWAP00000008210
annotation not available
    
 0.968
ENSCWAP00000008243
annotation not available
    
 0.968
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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