close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTA1Vesicle trafficking 1. (306 aa)    
Predicted Functional Partners:
CHMP5
Charged multivesicular body protein 5.
   
 0.999
ENSCWAP00000004537
annotation not available
   
 0.998
ENSCWAP00000007929
annotation not available
   
 0.997
ENSCWAP00000011838
annotation not available
   
 0.997
CHMP1A
Charged multivesicular body protein 1A.
    
 0.997
IST1
IST1 factor associated with ESCRT-III.
   
 
 0.976
GCH1
GTP cyclohydrolase 1.
   
   0.966
BCAS2
BCAS2 pre-mRNA processing factor.
   
   0.964
CHMP2A
Charged multivesicular body protein 2A.
    
 0.952
ENSCWAP00000007316
annotation not available
    
 0.942
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.