Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PGK1Phosphoglycerate kinase 1. (417 aa)    
Predicted Functional Partners:
TPI1
Triosephosphate isomerase 1.
 
 0.999
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
  
 0.998
GAPDHS
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.
  
 0.996
PGAM1
Phosphoglycerate mutase 1.
   
 0.991
PGAM2
Phosphoglycerate mutase 2.
   
 0.990
BPGM
Bisphosphoglycerate mutase.
   
 0.990
GPI
Glucose-6-phosphate isomerase.
  
 0.980
ENO1
Enolase 1.
  
 0.979
ENO2
Enolase 2.
  
 0.975
ENO3
Enolase 3.
  
 0.969
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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