STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSTM2BV-set and transmembrane domain containing 2B. (289 aa)    
Predicted Functional Partners:
LMCD1
LIM and cysteine rich domains 1.
      
 0.759
DOC2B
Double C2 domain beta.
   
  
 0.758
WHRN
Whirlin.
      
 0.695
HPSE
Heparanase.
      
 0.680
CHODL
Chondrolectin.
      
 0.680
CPNE6
Copine 6.
   
  
 0.616
CPNE4
Copine 4.
   
  
 0.616
LIPG
Lipase G, endothelial type.
      
 0.595
CRTAC1
Cartilage acidic protein 1.
   
  
 0.593
SLC17A6
Solute carrier family 17 member 6.
   
  
 0.591
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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