Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YTHDC1YTH domain containing 1. (740 aa)    
Predicted Functional Partners:
YTHDC2
YTH domain containing 2.
    
 0.977
PAPOLG
poly(A) polymerase gamma.
    
 0.971
ZC3H3
Zinc finger CCCH-type containing 3.
     
 0.960
CPSF2
Cleavage and polyadenylation specific factor 2.
    
 0.955
CLK2
CDC like kinase 2.
   
 
 0.950
RBM26
RNA binding motif protein 26.
   
 
 0.948
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.947
ENSCWAP00000016715
annotation not available
   
 
 0.945
FIP1L1
Factor interacting with PAPOLA and CPSF1.
   
 0.937
TRA2A
Transformer 2 alpha homolog.
   
 
 0.931
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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