STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS53VPS53 subunit of GARP complex. (832 aa)    
Predicted Functional Partners:
VPS52
VPS52 subunit of GARP complex.
   
 0.999
VPS51
VPS51 subunit of GARP complex.
   
 0.999
VPS54
VPS54 subunit of GARP complex.
   
 0.999
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.991
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 0.987
COG4
Component of oligomeric golgi complex 4.
   
 
 0.942
RAB6A
RAB6A, member RAS oncogene family.
    
 0.926
RAB6B
RAB6B, member RAS oncogene family.
    
 0.926
STX16-NPEPL1
STX16-NPEPL1 readthrough (NMD candidate).
    
 0.908
ARL1
ADP ribosylation factor like GTPase 1.
    
 0.908
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.