Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DCLRE1CDNA cross-link repair 1C. (688 aa)    
Predicted Functional Partners:
XRCC5
X-ray repair cross complementing 5.
  
 
 0.995
LIG4
DNA ligase 4.
   
 0.994
XRCC6
X-ray repair cross complementing 6.
    
 0.990
PRKAB1
Protein kinase AMP-activated non-catalytic subunit beta 1.
    
 
 0.951
PRKAA1
Protein kinase AMP-activated catalytic subunit alpha 1.
    
   0.948
PRKAB2
Protein kinase AMP-activated non-catalytic subunit beta 2.
    
 
 0.948
PRKAA2
Protein kinase AMP-activated catalytic subunit alpha 2.
    
   0.948
NHEJ1
Non-homologous end joining factor 1.
     
 0.934
POLL
DNA polymerase lambda.
  
 
 0.914
MRE11
MRE11 homolog, double strand break repair nuclease.
  
 0.909
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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