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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POLRMTRNA polymerase mitochondrial. (1219 aa)    
Predicted Functional Partners:
TFB2M
Transcription factor B2, mitochondrial.
   
 0.999
TFAM
Transcription factor A, mitochondrial.
    
 0.998
TFB1M
Transcription factor B1, mitochondrial.
   
 0.995
SRFBP1
Serum response factor binding protein 1.
   
 0.989
TEFM
Transcription elongation factor, mitochondrial.
    
 
 0.981
DIMT1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
   
 0.957
POLR1B
RNA polymerase I subunit B.
   
  
 0.896
ACO2
Aconitase 2.
    
 0.881
EIF5B
Eukaryotic translation initiation factor 5B.
   
  
 0.870
POLR2B
RNA polymerase II subunit B.
   
  
 0.849
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.